Top 10 Hotels in Ayios Thomas (from $42) 2026 - Competitive Prices

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Our top choices for Ayios Thomas hotels

A modern pool area with a stone wall, seating, and ambient lighting.

1. Manili Boutique Suites & Villas, an SLH Hotel

Archanes-Asterousia

Erik

$96 nightly

Dec 1 - Dec 2

Total with taxes and fees

A stone building with a wooden door and a small archway. There is a tree with purple flowers in front of the building.

2. Traditional Cretan Houses

Heraklion

Eric

$46 nightly

Dec 2 - Dec 3

Total with taxes and fees

An outdoor patio area with stone tables and wooden chairs, a stone fireplace, and a wooden pergola structure.

3. Earino

Heraklion

John

$72 nightly

Nov 11 - Nov 12

Total with taxes and fees

A swimming pool with lounge chairs and a gazebo, surrounded by a stone wall and a mountain backdrop.

4. Aetovigla Traditional Guest Houses

Malevizi

Monica

$92 nightly

Nov 6 - Nov 7

Total with taxes and fees

An outdoor dining area with wicker chairs and tables under olive trees, with sunlight filtering through.

5. Eliathos Hillside Retreat

Archanes-Asterousia

Suzanne

$97 nightly

Nov 3 - Nov 4

Total with taxes and fees

A reception area with a sign for Gallery Suites, surrounded by tables and chairs, and a green wall with plants.

6. Chapter 02 Gallery Suites

Heraklion

Kimberly

$72 nightly

Nov 3 - Nov 4

Total with taxes and fees

A hotel entrance with a clear sign reading "sofia hotel".

7. Sofia Hotel

Nea Alikarnassos

BRUCE

$55 nightly

Nov 2 - Nov 3

Total with taxes and fees

A swimming pool with lounge chairs and umbrellas, surrounded by stone walls and a view of the landscape.

8. Arolithos Traditional Cretan Village

Malevizi

Kevin

$34 nightly

Nov 6 - Nov 7

Total with taxes and fees

9. Carpe Diem Hotel

Archanes-Asterousia

Brian

$83 nightly

Nov 2 - Nov 3

Total with taxes and fees

A modern indoor swimming pool with lounge chairs and a staircase leading to an upper level.

10. Delina Mountain Resort

Anogia

Rian

$90 nightly

Nov 2 - Nov 3

Total with taxes and fees

A swimming pool with a person diving, surrounded by umbrellas and a building with multiple floors and balconies.

11. Marble Luxury Suites

Heraklion

Katharine

$61 nightly

Nov 2 - Nov 3

Total with taxes and fees

A modern outdoor seating area with wicker furniture, large windows offering a city view, and a ceiling with recessed lighting.

12. Marvel Deluxe Rooms

Nea Alikarnassos

Zhi Lin

$51 nightly

Nov 3 - Nov 4

Total with taxes and fees

A room with a bed, a chair, a balcony, and a window with curtains.

13. Asterion Hotel

Nea Alikarnassos

John

$71 nightly

Nov 2 - Nov 3

Total with taxes and fees

A stone courtyard with a rustic fountain, potted plants, and a wooden table.

14. Villa Daskalogianni

Heraklion

John southey

$353 nightly

Nov 2 - Nov 3

Total with taxes and fees

A swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a clear sky.

15. Civitel Creta Beach

Malevizi

Mihai Daniel

$73 nightly

Nov 6 - Nov 7

Total with taxes and fees

A modern building with a central courtyard, a reflective pool, and a tree.

16. Vaya Suites by Omilos Hotels

Malevizi

Basahrt

$60 nightly

Nov 3 - Nov 4

Total with taxes and fees

A modern hotel room with a bed, a desk with a chair, a large window with curtains, a wooden wardrobe, and a black basin on the counter.

17. Anesea City

Nea Alikarnassos

Lucille

$105 nightly

Nov 8 - Nov 9

Total with taxes and fees

A modern hotel with a central swimming pool, multiple balconies, and outdoor seating areas.

18. Galaxy Hotel Iraklio

Heraklion

Joaquin

$89 nightly

Nov 2 - Nov 3

Total with taxes and fees

A modern interior with a central staircase, a ceiling mural, and a chandelier.

19. GDM Megaron Historical Monument Hotel

Heraklion

Danielle

$115 nightly

Nov 4 - Nov 5

Total with taxes and fees

A balcony with a table, chairs, and a potted plant.

20. Atrion Hotel

Heraklion

kevin

$67 nightly

Nov 2 - Nov 3

Total with taxes and fees

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Hotels recommended for families in Ayios Thomas

A pool with a water feature, surrounded by chairs and trees.

Idi Hotel

Faistos

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Top Ayios Thomas Hotel Reviews

RoccaMare Heraklion - Handwritten Collection

10/10 Excellent

"This place is absolutely beautiful. I love that it is city center and a convenient walk to many of the shops, bus stops and delicious eateries. It does get a little noisy at night as the cars go by, bring your night time ear plugs unless youre immune to city noise:) Overall top tier service! & the staff were all amazing."

Agapi Beach Resort - Premium All Inclusive

8/10 Good

"The main advantage is that the hotel sits right next to a spacious beach with plenty of sunbeds. The food quality was excellent, but it lacked variety. We were there for over a week and found that our meal choices were similar, especially for breakfast. The dining hosts were friendly, but on some days the same or different hosts lacked warmth and didn't feel welcoming. The waiting staff were amazing and very friendly, although one gentleman was quite rude when we chose a certain spot to sit and pointed us to other available tables (without considering that it was easier for us to be seated in a quiet spot with fewer distractions for our daughter). Our room had air conditioning, but it was consistently set to a fan setting and didn't cool the room. When we questioned this at reception, they said they had changed the settings so it wouldn't cool in all guest rooms given the time of year (so all settings for every guest had to be the same and not separate, which is strange, as everyone should be able to adjust their A/C individually as they find suitable for them). The reception staff then said they would change the settings back after back-and-forth calls with the Director. For all-inclusive, note that top-brand drinks are not included as "all-inclusive" drinks, which was very disappointing. A special shout-out to the security lady on the beach who was so friendly and welcoming every time we saw her. She was so accommodating, and made the effort to say hello to our daughter."

GDM Megaron Historical Monument Hotel

10/10 Excellent

"Beautiful hotel and comfortable bed We were just there one night to sleep and it was super comfortable Parking was a little harder to figure out and limited space The location is very close to The ferry and we rented a car It would have been easier maybe if we got a short taxi ride over or maybe walked and picked up our car the next day But overall very happy with the accommodations"

Artion City Boutique Hotel

10/10 Excellent

"Great place to stay, friendly staff and management. Unfortunately had an issue with my ferry and missed a night of my stay but management was very helpful in trying to accommodate me. My only issue is that then hot water sometimes ran out in the shower and tap but the staff told me they were currently working on this issue which is reassuring. Great central location right near the centre of Heraklion"

Metropole Urban Hotel

8/10 Good

"Property was good and breakfast at the restaurant in the morning was plentiful as well (leave a lot of time for it). Area was quiet and nice. The thing that was annoying, however, was tha light in the washroom was turning on at night when you tried using it, waking up both yourself and your family members."

More cheap stays in Ayios Thomas

Mirabello Hotel

20 Theotokopoulou St Heraklion Crete Island

$49 nightly

$56 total

Nov 2 - Nov 3

Total with taxes and fees

8.6/10 Excellent! (418 reviews)

Hotels in Ayios Thomas with star-rating

Frequently asked questions

What is the best area to stay in Ayios Thomas?

The best area to stay in Ayios Thomas is within the village center itself, particularly around the main square and the surrounding streets.

This central part of Ayios Thomas offers a pleasant and convenient experience, with traditional Cretan architecture and easy access to local amenities. The village is small and walkable, making it simple to navigate on foot. You'll find a few local tavernas serving authentic cuisine and small shops for essentials.

For couples seeking a tranquil getaway, staying in the village center is ideal. It provides a peaceful retreat from more bustling tourist areas, allowing for relaxed evenings and a taste of local life.

When is the best time to go to Ayios Thomas?

The best time to visit Ayios Thomas is during the shoulder seasons of April to early June and September to October.

During these months, the weather is pleasantly warm, ideal for exploring the natural beauty of the region and enjoying outdoor activities without the peak summer crowds. You'll find comfortable temperatures for hiking the scenic trails, visiting local olive groves, or simply relaxing in the peaceful surroundings. This period offers a more relaxed experience for travelers seeking tranquility and natural beauty.

For couples looking for a romantic getaway, these shoulder seasons provide a serene atmosphere. The mild weather allows for leisurely strolls through the countryside, enjoying private dinners at local tavernas, and experiencing the slower pace of life in this charming Cretan village.

Can I cancel my hotel reservation on Expedia?

You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Ayios Thomas.

How can I save on a Ayios Thomas hotel booking with Expedia?

With Expedia, you earn OneKeyCash™* on eligible Ayios Thomas hotel bookings for every dollar you spend – just join our One Key™ travel rewards program to get started. It's free to join, and you'll unlock our lowest Member Prices as soon as you're signed in. On top of this, you could also save significantly by bundling your hotel and flights together on Expedia.

*Excludes taxes and fees. OneKeyCash is not redeemable for cash and can only be used on Expedia, Hotels.com and Vrbo.

How much is the nightly rate at a Ayios Thomas hotel?

Prices for hotels in Ayios Thomas often vary, but you can find a great deal from $42 on Expedia. All sorts of factors affect price, such as the time of year or the days of the week you choose for your stay. Find the best deals by being flexible with your dates, and sort search results by "Price: low to high" for the cheapest rate.

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Our top choices for Ayios Thomas hotels

1. Manili Boutique Suites & Villas, an SLH Hotel

2. Traditional Cretan Houses

3. Earino

4. Aetovigla Traditional Guest Houses

5. Eliathos Hillside Retreat

6. Chapter 02 Gallery Suites

7. Sofia Hotel

8. Arolithos Traditional Cretan Village

9. Carpe Diem Hotel

10. Delina Mountain Resort

11. Marble Luxury Suites

12. Marvel Deluxe Rooms

13. Asterion Hotel

14. Villa Daskalogianni

15. Civitel Creta Beach

16. Vaya Suites by Omilos Hotels

17. Anesea City

18. Galaxy Hotel Iraklio

19. GDM Megaron Historical Monument Hotel

20. Atrion Hotel

Hotels recommended for families in Ayios Thomas

Idi Hotel

Top Ayios Thomas Hotel Reviews

RoccaMare Heraklion - Handwritten Collection

More cheap stays in Ayios Thomas

Mirabello Hotel

Hotels in Ayios Thomas with star-rating

Frequently asked questions

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